MetaCrop 2.0: managing and exploring information about crop plant metabolism
نویسندگان
چکیده
MetaCrop is a manually curated repository of high-quality data about plant metabolism, providing different levels of detail from overview maps of primary metabolism to kinetic data of enzymes. It contains information about seven major crop plants with high agronomical importance and two model plants. MetaCrop is intended to support research aimed at the improvement of crops for both nutrition and industrial use. It can be accessed via web, web services and an add-on to the Vanted software. Here, we present several novel developments of the MetaCrop system and the extended database content. MetaCrop is now available in version 2.0 at http://metacrop.ipk-gatersleben.de.
منابع مشابه
MetaCrop: a detailed database of crop plant metabolism
MetaCrop is a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathway diagrams, reactions, locations, transport processes, reaction kinetics, taxonomy and literature. MetaCrop provides detailed information on six major crop plants with high agronomical importance and initial information about several other plants. The web interface...
متن کاملNovel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches
Crop plants play a major role in human and animal nutrition and increasingly contribute to chemical or pharmaceutical industry and renewable resources. In order to achieve important goals, such as the improvement of growth or yield, it is indispensable to understand biological processes on a detailed level. Therefore, the well-structured management of fine-grained information about metabolic pa...
متن کاملOPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences
Since the data volume in life sciences has been growing exponentially in recent years, it is indispensable to develop databases and tools for efficient data integration , curation and visualisation. Focusing on data handling in crop plant research, this paper presents an approach, which combines (i) a data warehouse (OPTIMAS-DW) for integrating experimental data, (ii) an information system (Met...
متن کاملSustainable harvest: managing plasticity for resilient crops
Maintaining crop production to feed a growing world population is a major challenge for this period of rapid global climate change. No consistent conceptual or experimental framework for crop plants integrates information at the levels of genome regulation, metabolism, physiology and response to growing environment. An important role for plasticity in plants is assisting in homeostasis in respo...
متن کاملImproving barley performance by proper foliar applied salicylic-acid under saline conditions
Despite general effect of salicylic-acid (SA) in improving plant growth andproductivity in saline conditions, there have not been unanimity about the bestconcentration. In this 2-yr field study the effect of different SA concentrations(0, 0.5, 1.0, 1.5 and 2.0 mM) was examined on growth, grain yield and yieldcomponents of barley under two non-saline (2 dS m-1) and saline (12 dS m-1)conditions. ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره 40 شماره
صفحات -
تاریخ انتشار 2012